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GNF2   Wiltshire T, Pletcher MT – GNF mouse SNP data-2

10133 locations mapped to Build 37, C57BL/6J assembly
Yr of initial MPD posting: 2004         48 strains       Strain coverage: uniform

Strain# snps
129S1/SvImJ 9236
129X1/SvJ 9237
A/J 9308
AKR/J 8990
BALB/cByJ 9423
BTBR T+ tf/J 9338
BUB/BnJ 9380
C3H/HeJ 9299
C57BL/10J 9305
C57BL/6J 9378
C57BLKS/J 9165
C57BR/cdJ 9327
C57L/J 9240
C58/J 9256
CAST/EiJ 8382
CBA/J 9368
CE/J 9233
CZECHII/EiJ 8758
DBA/1J 9056
DBA/2J 9333
DDK/Pas 9213
FVB/NJ 9355
I/LnJ 9122
JF1/Ms 8569
KK/HlJ 9144
(continued)# snps
LG/J 9010
LP/J 9328
MA/MyJ 9213
MAI/Pas 8394
MOLF/EiJ 8860
MSM/Ms 8596
NOD/ShiLtJ 9345
NON/ShiLtJ 8894
NZB/BlNJ 9196
NZW/LacJ 9171
PERA/EiJ 9255
PL/J 9151
PWD/PhJ 8314
RIIIS/J 9324
SEA/GnJ 9326
SEG/Pas 7079
SJL/J 9291
SM/J 9354
SPRET/EiJ 7409
ST/bJ 9111
SWR/J 9295
WSB/EiJ 9111
ZALENDE/EiJ 8790

Mouse genome coverage:




Notes:
    Pletcher MT, McClurg P, Batalov S, Su AI, Barnes SW, Lagler E, Korstanje R, Wang X, Nusskern D, Bogue MA, Mural RJ, Paigen B, Wiltshire T. Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse. PLoS Biol. 2004 Dec;2(12):e393. Epub 2004 Nov 09.     PubMed    MGI



    The project home page is http://snp.gnf.org. The dbSNP submitter handle for these SNPs is TWGNF.

    DNA was obtained from the Mouse DNA Resource, The Jackson Laboratory.

    Method summary is available here.

    Update - Oct '07 - We've added a number of previously omitted GNF SNPs because Build 36 locations have become available. See GNF3

    Protocol:

    See Pletcher et al., 2004 for details.










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